faiss
Facebook's library for efficient similarity search and clustering of dense vectors. Supports billions of vectors, GPU acceleration, and various index types (Flat, IVF, HNSW). Use for fast k-NN search, large-scale vector retrieval, or when you need pure similarity search without metadata. Best for high-performance applications.
architecture
Use when exploring codebase structure, understanding index implementations (HNSW, IVF, DISKANN, Sparse, MinHash), working with third-party libraries (faiss, hnswlib, DiskANN, Cardinal), or locating specific functionality
cdr3clustering
Cluster TCR/BCR clones by CDR3 sequences using GIANA or ClusTCR (both Faiss-based). Adds `CDR3_Cluster` column to metadata for clonotype analysis.
rag-retrieval
Patterns for using FAISS MCP tools to ingest documents and perform semantic retrieval.
retrieving-rag-context-adv
Patterns for using FAISS MCP tools to ingest documents and perform semantic retrieval.
LangChain RAG Pipeline
INVOKE THIS SKILL when building ANY retrieval-augmented generation (RAG) system. Covers document loaders, RecursiveCharacterTextSplitter, embeddings (OpenAI), and vector stores (Chroma, FAISS, Pinecone).
ArXivKB
Local arXiv paper manager with semantic search. Crawls arXiv categories, downloads PDFs, chunks content, and indexes with FAISS + Ollama embeddings. No cloud API keys required — everything runs locally.
vector-composition
Compose semantic vectors in Scry -- embed concepts as @handles, search by cosine distance, debias with vector algebra, and diagnose signal loss. Use when the task involves: semantic search, embedding, vector, cosine distance, <=>, "X but not Y", debias, embed this concept, @handle, vibe algebra, concept vector. NOT for: word2vec training, fine-tuning embeddings, local vector databases (FAISS, Pinecone, Chroma), or plain keyword/SQL search (use scry).