biomni
Autonomous biomedical AI agent framework for executing complex research tasks across genomics, drug discovery, molecular biology, and clinical analysis. Use this skill when conducting multi-step biomedical research including CRISPR screening design, single-cell RNA-seq analysis, ADMET prediction, GWAS interpretation, rare disease diagnosis, or lab protocol optimization. Leverages LLM reasoning with code execution and integrated biomedical databases.
mdr-745-specialist
EU MDR 2017/745 regulation specialist and consultant for medical device requirement management. Provides comprehensive MDR compliance expertise, gap analysis, technical documentation guidance, clinical evidence requirements, and post-market surveillance implementation. Use for MDR compliance assessment, classification decisions, technical file preparation, and regulatory requirement interpretation.
brainstorming
This skill should be used before implementing features, building components, or making changes. It guides exploring user intent, approaches, and design decisions before planning. Triggers on "let's brainstorm", "help me think through", "what should we build", "explore approaches", ambiguous feature requests, or when the user's request has multiple valid interpretations that need clarification.
interpreting-culture-index
Use when interpreting Culture Index surveys, CI profiles, behavioral assessments, or personality data. Supports individual interpretation, team composition (gas/brake/glue), burnout detection, profile comparison, hiring profiles, manager coaching, interview transcript analysis for trait prediction, candidate debrief, onboarding planning, and conflict mediation. Handles PDF vision or JSON input.
jungian-psychologist
Expert in Jungian analytical psychology, depth psychology, shadow work, archetypal analysis, dream interpretation, active imagination, addiction/recovery through Jungian lens, and the individuation process.
market-environment-analysis
Comprehensive market environment analysis and reporting tool. Analyzes global markets including US, European, Asian markets, forex, commodities, and economic indicators. Provides risk-on/risk-off assessment, sector analysis, and technical indicator interpretation. Triggers on keywords like market analysis, market environment, global markets, trading environment, market conditions, investment climate, market sentiment, forex analysis, stock market analysis, 相場環境, 市場分析, マーケット状況, 投資環境.
scholar-evaluation
Systematic framework for evaluating scholarly and research work based on the ScholarEval methodology. This skill should be used when assessing research papers, evaluating literature reviews, scoring research methodologies, analyzing scientific writing quality, or applying structured evaluation criteria to academic work. Provides comprehensive assessment across multiple dimensions including problem formulation, literature review, methodology, data collection, analysis, results interpretation, and scholarly writing quality.
ethnographic-coding-thematics
Code qualitative field data, identify emergent themes, and develop grounded interpretations using NVivo/Atlas.ti methodologies
archival-finding-aid-interpretation
Navigate finding aids, catalog systems, and archival hierarchies to efficiently locate relevant collections and documents
clinvar-querier
ClinVar database query skill for clinical variant interpretation and pathogenicity lookup
gsea-pathway-analyzer
Gene Set Enrichment Analysis skill for functional annotation and pathway interpretation
abstract-domain-library
Library of abstract domains for static analysis and abstract interpretation
hermeneutical-interpretation
Conduct systematic textual interpretation using historical-critical, literary, and phenomenological methods while attending to context, genre, and interpretive traditions
learning-analytics-interpretation
Analyze learner data from LMS reports, assessments, and engagement metrics to identify patterns and inform instructional decisions.
bio-metabolomics-lipidomics
Specialized lipidomics analysis for lipid identification, quantification, and pathway interpretation. Covers LC-MS lipidomics with LipidSearch, MS-DIAL, and LipidMaps annotation. Use when analyzing lipid classes, chain composition, or lipid-specific pathways.
bio-workflows-multi-omics-pipeline
End-to-end multi-omics integration workflow. Orchestrates data harmonization, MOFA/mixOmics integration, factor interpretation, and downstream analysis across transcriptomics, proteomics, metabolomics, and other modalities. Use when integrating multiple omics datasets.
bio-variant-calling-filtering-best-practices
Comprehensive variant filtering including GATK VQSR, hard filters, bcftools expressions, and quality metric interpretation for SNPs and indels. Use when filtering variants using GATK best practices.
bio-variant-calling-clinical-interpretation
Clinical variant interpretation using ClinVar, ACMG guidelines, and pathogenicity predictors. Prioritize variants for diagnostic and research applications. Use when interpreting clinical significance of variants.
analytics-interpretation
Interpret GA4 and GSC data with benchmarks, status indicators, and actionable insights
ml-rigor
Enforces baseline comparisons, cross-validation, interpretation, and leakage prevention for ML pipelines
mcp-local-rag
Provides score interpretation (< 0.3 good, > 0.5 skip), query optimization, and source naming for query_documents, ingest_file, ingest_data tools. Use this skill when working with RAG, searching documents, ingesting files, saving web content, or handling PDF, HTML, DOCX, TXT, Markdown.
analytics-interpretation
Interpret GA4 and Google Search Console data into clear benchmarks, status indicators, and prioritized actions.
schemelike-metacircular-eval
Guide for implementing metacircular evaluators—interpreters that can interpret themselves. This skill should be used when building self-interpreting Scheme-like evaluators, debugging multi-level interpretation issues, or implementing language features like environments, closures, and special forms. Focuses on incremental development, continuous metacircular testing, and systematic debugging of nested interpretation failures.
jungian-psychologist
Expert in Jungian analytical psychology, depth psychology, shadow work, archetypal analysis, dream interpretation, active imagination, addiction/recovery through Jungian lens, and the individuation process - grounded in primary sources and clinical frameworks. Activate on 'Jung', 'Jungian', 'shadow work', 'archetypes', 'dream interpretation', 'active imagination', 'individuation', 'anima', 'animus', 'collective unconscious', 'addiction', 'recovery', 'spiritus contra spiritum'. NOT for therapy or diagnosis (only licensed analysts diagnose), active psychosis, severe dissociation, or replacing the relational container of actual Jungian analysis.
multimodal-analysis
Analyze media files (PDFs, images, diagrams) that require interpretation beyond raw text. Extract specific information or summaries from documents and describe visual content. Use for document analysis, image understanding, diagram interpretation, chart analysis, table extraction, and any media requiring visual or contextual interpretation beyond literal text extraction.
project-astrology-numerology
Use when developing astrology/numerology apps, validating chart calculations (timezone/DST, quadrant handling), or producing psychology-first interpretations. Expert advisor (30+ years) catches common bugs (D026-D028) and defines accuracy/test standards. (project)
project-astrology-vedic
Vedic/Jyotish (sidereal) astrology calculations and interpretation including Kundali/Kundli, Lagna, Rashi (Moon sign), Nakshatra, Vimshottari Dasha, yogas, vargas (D-9/D-10), Sade Sati, prashna (horary), panchang/muhurta, and Ashtakoot compatibility. Use when user asks for Vedic/Jyotish/Indian astrology or mentions those terms; not for Western/Tropical, Chinese astrology, or Tarot. (project)
narrative-text-visualization
Generate structured narrative text visualizations from data using T8 Syntax. Use when users want to create data interpretation reports, summaries, or structured articles with semantic entity annotations. T8 is designed for unstructured data visualization where T stands for Text and 8 represents a byte of 8 bits, symbolizing deep insights beneath the text.
dialectical-mapping-steelmanning
Use when debates are trapped in false dichotomies, polarized positions need charitable interpretation, tradeoffs are obscured by binary framing, synthesis beyond 'pick one side' is needed, or when users mention steelman arguments, thesis-antithesis-synthesis, Hegelian dialectic, third way solutions, or resolving seemingly opposed principles.
gemini-json-parsing
Parse Gemini CLI headless output (JSON and stream-JSON formats). Covers response extraction, stats interpretation, error handling, and tool call analysis. Use when processing Gemini CLI programmatic output.
yaml-jazz
YAML is sheet music. The LLM is the jazz musician. Comments are the soul.
IDA Swarm Technical Reference
Technical reference for using IDA Swarm MCP tools. Covers system constraints, architecture, TRUE CONTEXT principle, result interpretation, and debugging. Use when analyzing binaries via IDA Swarm or troubleshooting sessions.
empathic-expressions
Intent-based code interpretation across all languages — SQL, Python, JS, YAML, Bash, and beyond
postel
Be conservative in what you send, liberal in what you accept.
statistical-analysis
Comprehensive statistical analysis for research, experiments, and data science. Covers hypothesis testing, effect sizes, confidence intervals, Bayesian methods, regression, and advanced techniques. Emphasizes correct interpretation and avoiding common statistical mistakes. Use when \", \" mentioned.
protein-structure
Patterns for protein structure prediction using AlphaFold2/ColabFold, structural analysis, model quality assessment, and integration with experimental data. Covers best practices and critical interpretation of prediction confidence metrics. Use when ", " mentioned.
lawyer-analyst
Analyzes events through legal lens using statutory interpretation, case law analysis, legal reasoning, constitutional principles, and multiple legal frameworks (common law, civil law, international law). Provides insights on legal rights, obligations, liabilities, remedies, and compliance requirements. Use when: Legal disputes, contracts, regulations, compliance, rights analysis, liability assessment. Evaluates: Legal obligations, rights, liabilities, remedies, precedent, statutory authority, constitutionality.
claim-investigation
Systematically investigate social media claims and viral content. Use when fact-checking complex claims, when decomposing multi-part assertions, or when investigating narratives that mix facts with interpretation.
biomni
Autonomous biomedical AI agent framework for executing complex research tasks across genomics, drug discovery, molecular biology, and clinical analysis. Use this skill when conducting multi-step biomedical research including CRISPR screening design, single-cell RNA-seq analysis, ADMET prediction, GWAS interpretation, rare disease diagnosis, or lab protocol optimization. Leverages LLM reasoning with code execution and integrated biomedical databases.
search-enhancer
Enhanced code search with semantic understanding, pattern matching, and intelligent query interpretation.
brainstorming
This skill should be used before implementing features, building components, or making changes. It guides exploring user intent, approaches, and design decisions before planning. Triggers on "let's brainstorm", "help me think through", "what should we build", "explore approaches", ambiguous feature requests, or when the user's request has multiple valid interpretations that need clarification.
metabolicfeatures
Performs enrichment analysis (GSEA-based) for metabolic pathways across different cell groups to identify significantly enriched pathways. Uses fast gene set enrichment analysis (fgsea package) to rank pathways by their association with specific clusters, conditions, or cell states. Generates summary plots and enrichment visualizations for biological interpretation.
Statistical Analyzer
Perform statistical hypothesis testing, regression analysis, ANOVA, and t-tests with plain-English interpretations and visualizations.
checkpoint-ambiguity-review
Review checkpoint specs and tests to identify tests that encode ambiguous interpretations rather than explicit requirements. Use when asked to check checkpoint_N.md against test_checkpoint_N.py, when auditing tests for ambiguity, or when reviewing snapshot eval failures for interpretive issues.
riff
Self-contained parallel generator — invoke directly, do not decompose. Generates 3-10 app variations in parallel for comparing ideas. Use when user says "explore options", "give me variations", "riff on this", "brainstorm approaches", or wants to see multiple interpretations of a concept.
Interview Analyst
Pragmatic qualitative analysis for interview data in sociology research. Guides you through systematic coding, interpretation, and synthesis with quality checkpoints. Supports theory-informed (Track A) or data-first (Track B) approaches.
structural-biology
Structural biology analysis including protein structure validation, AlphaFold interpretation, and structural comparisons
ontario-expropriations-act-statutory-interpretation
Expert in interpreting specific Ontario Expropriations Act provisions including compensation (s.13-18), procedural requirements (s.5-12), hearings and appeals (s.19-30), and case law application. Use when interpreting statutory provisions for legal compliance or arguments. Key terms include market value, disturbance damages, injurious affection, hearing timelines, OLT jurisdiction, Antrim test, Gossen reasonableness