geo-database
davila7Access NCBI GEO for gene expression/genomics data. Search/download microarray and RNA-seq datasets (GSE, GSM, GPL), retrieve SOFT/Matrix files, for transcriptomics and expression analysis.
market-research-reports
davila7Generate comprehensive market research reports (50+ pages) in the style of top consulting firms (McKinsey, BCG, Gartner). Features professional LaTeX formatting, extensive visual generation with scientific-schematics and generate-image, deep integration with research-lookup for data gathering, and multi-framework strategic analysis including Porter's Five Forces, PESTLE, SWOT, TAM/SAM/SOM, and BCG Matrix.
market-research-reports
K-Dense-AIGenerate comprehensive market research reports (50+ pages) in the style of top consulting firms (McKinsey, BCG, Gartner). Features professional LaTeX formatting, extensive visual generation with scientific-schematics and generate-image, deep integration with research-lookup for data gathering, and multi-framework strategic analysis including Porter Five Forces, PESTLE, SWOT, TAM/SAM/SOM, and BCG Matrix.
geo-database
K-Dense-AIAccess NCBI GEO for gene expression/genomics data. Search/download microarray and RNA-seq datasets (GSE, GSM, GPL), retrieve SOFT/Matrix files, for transcriptomics and expression analysis.
matlab
K-Dense-AIMATLAB and GNU Octave numerical computing for matrix operations, data analysis, visualization, and scientific computing. Use when writing MATLAB/Octave scripts for linear algebra, signal processing, image processing, differential equations, optimization, statistics, or creating scientific visualizations. Also use when the user needs help with MATLAB syntax, functions, or wants to convert between MATLAB and Python code. Scripts can be executed with MATLAB or the open-source GNU Octave interpreter.
competitive-intelligence
anthropicsResearch your competitors and build an interactive battlecard. Outputs an HTML artifact with clickable competitor cards and a comparison matrix. Trigger with "competitive intel", "research competitors", "how do we compare to [competitor]", "battlecard for [competitor]", or "what's new with [competitor]".
red-pill
openclawWake up... The Matrix has you. I've come to show you how deep the rabbit hole goes.
todozi
openclawTodozi Eisenhower matrix API client + LangChain tools. Create matrices, tasks, goals, notes; list/search/update; bulk operations; webhooks. Categories: do, done, dream, delegate, defer, dont.
adding-models
letta-aiGuide for adding new LLM models to Letta Code. Use when the user wants to add support for a new model, needs to know valid model handles, or wants to update the model configuration. Covers models.json configuration, CI test matrix, and handle validation.
confusion-matrix-generator
jeremylongshoreConfusion Matrix Generator - Auto-activating skill for ML Training. Triggers on: confusion matrix generator, confusion matrix generator Part of the ML Training skill category.
robius-matrix-integration
ZhangHanDongCRITICAL: Use for Matrix SDK integration with Makepad. Triggers on: Matrix SDK, sliding sync, MatrixRequest, timeline, matrix-sdk, matrix client, robrix, matrix room, Matrix integration, chat client
cicd-pipelines
a5c-aiMulti-platform CI/CD pipeline expertise. Generate GitHub Actions, GitLab CI, Jenkins, and Azure Pipelines configurations. Analyze failures, optimize execution time, validate syntax, and configure matrix builds and caching strategies.
cross-platform-test-matrix
a5c-aiGenerate CI test matrix for Windows, macOS, and Linux combinations
madgraph-amplitude-calculator
a5c-aiMadGraph matrix element calculation skill for BSM physics, cross-section computation, and event generation
compatibility-test-matrix
a5c-aiMulti-version, multi-platform SDK compatibility testing
category-strategy-builder
a5c-aiCategory management strategy development using the Kraljic Matrix and portfolio optimization
stakeholder-matrix-generator
a5c-aiGenerate stakeholder analysis matrices and engagement visualizations
requirements-verification
a5c-aiSkill for aerospace requirements verification and validation matrix management
traceability-matrix-builder
a5c-aiBuild and maintain requirements traceability matrices with bidirectional links and coverage analysis.
kwant-quantum-transport
a5c-aiKwant quantum transport skill for mesoscopic physics, scattering matrix calculations, and nanostructure modeling
tech-divergence
Evaluate technical options with scoring matrix, trigger Gate 4 for significant decisions
dependency-mapping
Map slice dependencies using DSM matrix and prioritize by risk
writing-github-actions
ancolemanWrite GitHub Actions workflows with proper syntax, reusable workflows, composite actions, matrix builds, caching, and security best practices. Use when creating CI/CD workflows for GitHub-hosted projects or automating GitHub repository tasks.
bio-expression-matrix-counts-ingest
GPTomicsLoad gene expression count matrices from various formats including CSV, TSV, featureCounts, Salmon, kallisto, and 10X. Use when importing quantification results for downstream analysis.
bio-hi-c-analysis-hic-data-io
GPTomicsLoad, convert, and manipulate Hi-C contact matrices using cooler format. Read .cool/.mcool files, convert from .hic format, access matrix data, and export to different formats. Use when loading or converting Hi-C contact matrices.
bio-expression-matrix-metadata-joins
GPTomicsMerge sample metadata with count matrices and add gene annotations. Use when preparing data for differential expression analysis or visualization.
bio-expression-matrix-gene-id-mapping
GPTomicsConvert between gene identifier systems including Ensembl, Entrez, HGNC symbols, and UniProt. Use when mapping IDs for pathway analysis or matching different data sources.
bio-rna-quantification-count-matrix-qc
GPTomicsQuality control and exploration of RNA-seq count matrices before differential expression. Check for outliers, batch effects, and sample relationships. Use when assessing count matrix quality before DE analysis.
bio-flow-cytometry-compensation-transformation
GPTomicsSpillover compensation and data transformation for flow cytometry. Covers compensation matrix calculation, application, and biexponential/arcsinh transforms. Use when correcting spectral overlap between fluorophores or transforming data for analysis.
bio-hi-c-analysis-matrix-operations
GPTomicsBalance, normalize, and transform Hi-C contact matrices using cooler and cooltools. Apply iterative correction (ICE), compute expected values, and generate observed/expected matrices. Use when normalizing or transforming Hi-C matrices.
bio-expression-matrix-sparse-handling
GPTomicsWork with sparse matrices for memory-efficient storage of count data. Use when dealing with single-cell data or large bulk RNA-seq datasets where most values are zero.
agent-support-matrix
jazzyalexMaintain Agent Sessions agent support matrix and JSON/JSONL parsing compatibility. Use when checking upstream agent releases for session format changes, updating max verified versions in docs/agent-support/agent-support-matrix.yml, or updating docs/agent-json-tracking.md and fixtures/tests.
rubric-writer
WILLOSCARWrite a rubric-based peer review report (`output/REVIEW.md`) using extracted claims and evidence gaps (novelty/soundness/clarity/impact). **Trigger**: rubric review, referee report, peer review write-up, 审稿报告, REVIEW.md. **Use when**: peer-review pipeline 的最后阶段（C3），已有 `output/CLAIMS.md` + `output/MISSING_EVIDENCE.md`（以及可选 novelty matrix）。 **Skip if**: 上游产物未就绪（claims/evidence gaps 缺失）或你不打算输出完整审稿报告。 **Network**: none. **Guardrail**: 给可执行建议（actionable feedback），并覆盖 novelty/soundness/clarity/impact；避免泛泛而谈。
claim-evidence-matrix
WILLOSCARBuild a section-by-section claim–evidence matrix (`outline/claim_evidence_matrix.md`) from the outline and paper notes. **Trigger**: claim–evidence matrix, evidence mapping, 证据矩阵, 主张-证据对齐. **Use when**: 写 prose 之前需要把每个小节的可检验主张与证据来源显式化（outline + paper notes 已就绪）。 **Skip if**: 缺少 `outline/outline.yml` 或 `papers/paper_notes.jsonl`。 **Network**: none. **Guardrail**: bullets-only（NO PROSE）；每个 claim 至少 2 个证据来源（或显式说明例外）。
novelty-matrix
WILLOSCARCreate a novelty/prior-work matrix comparing the submission’s contributions against related work (overlaps vs deltas). **Trigger**: novelty matrix, prior-work matrix, overlap/delta, 相关工作对比, 新颖性矩阵. **Use when**: peer review 中评估 novelty/positioning，需要把贡献与相关工作逐项对齐并写出差异点证据。 **Skip if**: 缺少 claims（先跑 `claims-extractor`）或你不打算做新颖性定位分析。 **Network**: none (retrieval of additional related work is out-of-scope unless provided). **Guardrail**: 明确 overlap 与 delta；尽量给出可追溯证据来源（来自稿件/引用/作者陈述）。
claim-matrix-rewriter
WILLOSCARRewrite `outline/claim_evidence_matrix.md` as a projection/index of evidence packs (NO PROSE), so claims/axes are driven by `outline/evidence_drafts.jsonl` rather than outline placeholders. **Trigger**: claim matrix rewriter, rewrite claim-evidence matrix, evidence-first claim matrix, matrix index, 证据矩阵重写, 从证据包生成矩阵. **Use when**: `outline/subsection_briefs.jsonl` + `outline/evidence_drafts.jsonl` are ready and you want a clean claim→evidence index for QA/writing. **Skip if**: `outline/claim_evidence_matrix.md` is already refined and consistent with evidence packs. **Network**: none. **Guardrail**: NO PROSE; do not invent facts; only cite keys present in `citations/ref.bib`; if evidence is abstract/title-only, claims must be provisional.
documentation-criteria
shinprGuides PRD, ADR, Design Doc, and Work Plan creation with templates and decision matrix.
prioritization-effort-impact
nicepkgUse when ranking backlogs, deciding what to do first based on effort vs impact (quick wins vs big bets), prioritizing feature roadmaps, triaging bugs or technical debt, allocating resources across initiatives, identifying low-hanging fruit, evaluating strategic options with 2x2 matrix, or when user mentions prioritization, quick wins, effort-impact matrix, high-impact low-effort, big bets, or asks "what should we do first?".
business-competitor-analysis
kenneth-liaoPerform comprehensive competitor analysis for any business. Produces an executive-summary markdown report with target customer profile, market positioning, pricing/business model, product features, funding/company size, SWOT analysis, and competitive matrix. All findings are data-grounded. Use when the user asks to analyze competitors, understand competitive landscape, compare a business to alternatives, or perform market research.
Matrix Code Review
ojowwalker77This skill should be used when the user asks to "review this code", "review PR", "code review", "review staged changes", "blast radius analysis", "check impact of changes", or needs comprehensive context-aware code review.
Swift & SwiftUI Expert
ojowwalker77This skill should be used when the user is working with Swift or SwiftUI, asks to "write SwiftUI code", "create iOS app", "fix SwiftUI view", "help with Swift", "SwiftUI architecture", "iOS development", or needs expert-level Swift/SwiftUI guidance with modern patterns and best practices.
Matrix List
ojowwalker77This skill should be used when the user asks to "list matrix solutions", "show matrix stats", "display memory contents", "view matrix status", "show failures", "list warnings", "export matrix data", "backup matrix", "export solutions", or needs to see or export Matrix memory.
Matrix Reindex
ojowwalker77This skill should be used when the user asks to "reindex the codebase", "refresh code index", "update matrix index", "rebuild symbol index", or needs to manually trigger code indexing.
Effect-TS Expert
ojowwalker77This skill should be used when the user is working with Effect-TS, asks to "write Effect code", "use Effect", "functional TypeScript", "handle errors with Effect", "dependency injection Effect", "Effect Layer", or needs expert-level guidance on Effect-TS patterns, error handling, concurrency, and best practices.
Matrix Warnings
ojowwalker77This skill should be used when the user asks to "add warning", "remove warning", "list warnings", "check file warning", "check package warning", "manage grudges", or needs to manage file and package warnings in Matrix.
Matrix Doctor
ojowwalker77This skill should be used when the user asks to "run matrix diagnostics", "check matrix health", "fix matrix issues", "troubleshoot matrix", or mentions matrix not working. Runs comprehensive diagnostics on the Matrix plugin and automatically fixes issues.
Matrix Deep Research
ojowwalker77This skill should be used when the user asks to "research a topic", "deep research", "investigate thoroughly", "multi-source research", "comprehensive analysis", or needs to conduct research across web, documentation, and memory sources.
doc-requirements-matrix
gtmagentsFramework for capturing documentation requirements, scoring priority, and assigning owners.