qmd
Search markdown knowledge bases, notes, and documentation using QMD. Use when users ask to search notes, find documents, or look up information.
qmd
Search and retrieve markdown documents from local knowledge bases using qmd. Supports BM25 keyword search, vector semantic search, and hybrid search with LLM re-ranking. Use for querying indexed notes, documentation, meeting transcripts, and any markdown-based knowledge. Requires qmd CLI installed (bun install -g https://github.com/tobi/qmd).
bio-atac-seq-footprinting
Detect transcription factor binding sites through footprinting analysis in ATAC-seq data using TOBIAS. Use when identifying TF occupancy patterns within accessible regions, as TF binding protects DNA from Tn5 cutting.
bio-workflows-atacseq-pipeline
End-to-end ATAC-seq workflow from FASTQ files to differential accessibility and TF footprinting. Covers alignment, peak calling with MACS3, QC metrics, and optional TOBIAS footprinting. Use when running end-to-end ATAC-seq analysis from FASTQ to differential accessibility.
ship-decisions
Guides "ship or iterate?" decisions using Shreyas Doshi's frameworks, Marty Cagan's shipping philosophy, and Tobi Lutke's reversible decision-making. Use when deciding if feature is ready, preventing perfectionism paralysis, applying one-way vs two-way door thinking, or balancing technical debt vs shipping speed.
nix-cleanup
CI workflow checks and code cleanup tools
Niri
Always include when making changes to niri
Waybar
Always include when making changes to waybar
agency
Use Agency CLI to run parallel AI coding tasks in isolated Git worktrees. Invoke when user mentions "agency", "ag", parallel tasks, worktrees, or wants to run multiple coding agents simultaneously.
Benchmarking & Optimization
Use this skill when the user asks to run benchmarks, profile performance, measure allocations, optimize render speed, find hot paths, generate a flamegraph, or mentions stackprof, memory profiling, or performance optimization.
Thymer Plugin
Build Thymer plugins - use when the user asks to create, modify, or debug Thymer plugins for the note-taking/project management app
swift-mvvm
Use when writing or refactoring Swift (SwiftUI/UIKit/AppKit) code to follow MVVM with a small, testable ViewModel. Triggers on: MVVM, ViewModel, ObservableObject, @Observable, Observation, AppKit, NSViewController, UIKit, state management, dependency injection, protocol adapters, refactor view logic, massive view model, testable, async/await, Combine, Swift Testing, #expect.