Science & Education AI Agent Skills
Explore 1,599 Science & Education AI agent skills on AgentCC. Compare source repositories, technical metadata, and installation guidance.
read-arxiv-paper
karpathyUse this skill when when asked to read an arxiv paper given an arxiv URL
Ethical Hacking Methodology
davila7This skill should be used when the user asks to "learn ethical hacking", "understand penetration testing lifecycle", "perform reconnaissance", "conduct security scanning", "exploit vulnerabilities", or "write penetration test reports". It provides comprehensive ethical hacking methodology and techniques.
claude-scientific-skills
sickn33Scientific research and analysis skills
bgpt-paper-search
K-Dense-AISearch scientific papers and retrieve structured experimental data extracted from full-text studies via the BGPT MCP server. Returns 25+ fields per paper including methods, results, sample sizes, quality scores, and conclusions. Use for literature reviews, evidence synthesis, and finding experimental details not available in abstracts alone.
gget
davila7CLI/Python toolkit for rapid bioinformatics queries. Preferred for quick BLAST searches. Access to 20+ databases: gene info (Ensembl/UniProt), AlphaFold, ARCHS4, Enrichr, OpenTargets, COSMIC, genome downloads. For advanced BLAST/batch processing, use biopython. For multi-database integration, use bioservices.
jupyter-notebook
openaiUse when the user asks to create, scaffold, or edit Jupyter notebooks (`.ipynb`) for experiments, explorations, or tutorials; prefer the bundled templates and run the helper script `new_notebook.py` to generate a clean starting notebook.
metabolomics-workbench-database
K-Dense-AIAccess NIH Metabolomics Workbench via REST API (4,200+ studies). Query metabolites, RefMet nomenclature, MS/NMR data, m/z searches, study metadata, for metabolomics and biomarker discovery.
biorxiv-database
davila7Efficient database search tool for bioRxiv preprint server. Use this skill when searching for life sciences preprints by keywords, authors, date ranges, or categories, retrieving paper metadata, downloading PDFs, or conducting literature reviews.
scientific-problem-selection
anthropicsThis skill should be used when scientists need help with research problem selection, project ideation, troubleshooting stuck projects, or strategic scientific decisions. Use this skill when users ask to pitch a new research idea, work through a project problem, evaluate project risks, plan research strategy, navigate decision trees, or get help choosing what scientific problem to work on. Typical requests include "I have an idea for a project", "I'm stuck on my research", "help me evaluate this project", "what should I work on", or "I need strategic advice about my research".
citation-management
K-Dense-AIComprehensive citation management for academic research. Search Google Scholar and PubMed for papers, extract accurate metadata, validate citations, and generate properly formatted BibTeX entries. This skill should be used when you need to find papers, verify citation information, convert DOIs to BibTeX, or ensure reference accuracy in scientific writing.
scientific-writing
davila7Core skill for the deep research and writing tool. Write scientific manuscripts in full paragraphs (never bullet points). Use two-stage process: (1) create section outlines with key points using research-lookup, (2) convert to flowing prose. IMRAD structure, citations (APA/AMA/Vancouver), figures/tables, reporting guidelines (CONSORT/STROBE/PRISMA), for research papers and journal submissions.
statistical-analysis
anthropicsApply statistical methods including descriptive stats, trend analysis, outlier detection, and hypothesis testing. Use when analyzing distributions, testing for significance, detecting anomalies, computing correlations, or interpreting statistical results.
peer-review
K-Dense-AIStructured manuscript/grant review with checklist-based evaluation. Use when writing formal peer reviews with specific criteria methodology assessment, statistical validity, reporting standards compliance (CONSORT/STROBE), and constructive feedback. Best for actual review writing, manuscript revision. For evaluating claims/evidence quality use scientific-critical-thinking; for quantitative scoring frameworks use scholar-evaluation.
cellxgene-census
davila7Query CZ CELLxGENE Census (61M+ cells). Filter by cell type/tissue/disease, retrieve expression data, integrate with scanpy/PyTorch, for population-scale single-cell analysis.
pint-compute
parcadeiUnit-aware computation with Pint - convert units, dimensional analysis, unit arithmetic
GeoMaster
K-Dense-AIComprehensive geospatial science skill covering remote sensing, GIS, spatial analysis, machine learning for earth observation, and 30+ scientific domains. Supports satellite imagery processing (Sentinel, Landsat, MODIS, SAR, hyperspectral), vector and raster data operations, spatial statistics, point cloud processing, network analysis, and 7 programming languages (Python, R, Julia, JavaScript, C++, Java, Go) with 500+ code examples. Use for remote sensing workflows, GIS analysis, spatial ML, Earth observation data processing, terrain analysis, hydrological modeling, marine spatial analysis, atmospheric science, and any geospatial computation task.
venue-templates
davila7Access comprehensive LaTeX templates, formatting requirements, and submission guidelines for major scientific publication venues (Nature, Science, PLOS, IEEE, ACM), academic conferences (NeurIPS, ICML, CVPR, CHI), research posters, and grant proposals (NSF, NIH, DOE, DARPA). This skill should be used when preparing manuscripts for journal submission, conference papers, research posters, or grant proposals and need venue-specific formatting requirements and templates.
eigenvalues
parcadeiProblem-solving strategies for eigenvalues in linear algebra
research-grants
K-Dense-AIWrite competitive research proposals for NSF, NIH, DOE, DARPA, and Taiwan NSTC. Agency-specific formatting, review criteria, budget preparation, broader impacts, significance statements, innovation narratives, and compliance with submission requirements.
denario
davila7Multiagent AI system for scientific research assistance that automates research workflows from data analysis to publication. This skill should be used when generating research ideas from datasets, developing research methodologies, executing computational experiments, performing literature searches, or generating publication-ready papers in LaTeX format. Supports end-to-end research pipelines with customizable agent orchestration.
continuity
parcadeiProblem-solving strategies for continuity in real analysis
gene-database
K-Dense-AIQuery NCBI Gene via E-utilities/Datasets API. Search by symbol/ID, retrieve gene info (RefSeqs, GO, locations, phenotypes), batch lookups, for gene annotation and functional analysis.
geo-database
davila7Access NCBI GEO for gene expression/genomics data. Search/download microarray and RNA-seq datasets (GSE, GSM, GPL), retrieve SOFT/Matrix files, for transcriptomics and expression analysis.
entropy
parcadeiProblem-solving strategies for entropy in information theory
biopython
K-Dense-AIComprehensive molecular biology toolkit. Use for sequence manipulation, file parsing (FASTA/GenBank/PDB), phylogenetics, and programmatic NCBI/PubMed access (Bio.Entrez). Best for batch processing, custom bioinformatics pipelines, BLAST automation. For quick lookups use gget; for multi-service integration use bioservices.
pdb-database
davila7Access RCSB PDB for 3D protein/nucleic acid structures. Search by text/sequence/structure, download coordinates (PDB/mmCIF), retrieve metadata, for structural biology and drug discovery.
banach-spaces
parcadeiProblem-solving strategies for Banach spaces in functional analysis
scientific-writing
K-Dense-AICore skill for the deep research and writing tool. Write scientific manuscripts in full paragraphs (never bullet points). Use two-stage process with (1) section outlines with key points using research-lookup then (2) convert to flowing prose. IMRAD structure, citations (APA/AMA/Vancouver), figures/tables, reporting guidelines (CONSORT/STROBE/PRISMA), for research papers and journal submissions.
matchms
davila7Mass spectrometry analysis. Process mzML/MGF/MSP, spectral similarity (cosine, modified cosine), metadata harmonization, compound ID, for metabolomics and MS data processing.
operator-theory
parcadeiProblem-solving strategies for operator theory in functional analysis
literature-review
K-Dense-AIConduct comprehensive, systematic literature reviews using multiple academic databases (PubMed, arXiv, bioRxiv, Semantic Scholar, etc.). This skill should be used when conducting systematic literature reviews, meta-analyses, research synthesis, or comprehensive literature searches across biomedical, scientific, and technical domains. Creates professionally formatted markdown documents and PDFs with verified citations in multiple citation styles (APA, Nature, Vancouver, etc.).
arboreto
davila7Infer gene regulatory networks (GRNs) from gene expression data using scalable algorithms (GRNBoost2, GENIE3). Use when analyzing transcriptomics data (bulk RNA-seq, single-cell RNA-seq) to identify transcription factor-target gene relationships and regulatory interactions. Supports distributed computation for large-scale datasets.
boundary-value-problems
parcadeiProblem-solving strategies for boundary value problems in ordinary and partial differential equations
pytdc
K-Dense-AITherapeutics Data Commons. AI-ready drug discovery datasets (ADME, toxicity, DTI), benchmarks, scaffold splits, molecular oracles, for therapeutic ML and pharmacological prediction.
scikit-bio
davila7Biological data toolkit. Sequence analysis, alignments, phylogenetic trees, diversity metrics (alpha/beta, UniFrac), ordination (PCoA), PERMANOVA, FASTA/Newick I/O, for microbiome analysis.
limits-colimits
parcadeiProblem-solving strategies for limits and colimits in category theory
scanpy
K-Dense-AIStandard single-cell RNA-seq analysis pipeline. Use for QC, normalization, dimensionality reduction (PCA/UMAP/t-SNE), clustering, differential expression, and visualization. Best for exploratory scRNA-seq analysis with established workflows. For deep learning models use scvi-tools; for data format questions use anndata.
Ethical Hacking Methodology
zebbernThis skill should be used when the user asks to "learn ethical hacking", "understand penetration testing lifecycle", "perform reconnaissance", "conduct security scanning", "exploit vulnerabilities", or "write penetration test reports". It provides comprehensive ethical hacking methodology and techniques.
math-help
parcadeiGuide to the math cognitive stack - what tools exist and when to use each
arxiv-pattern-discovery
nibzardSearch arXiv for academic papers describing agentic AI patterns. Use when user asks to find new patterns from academic literature, search arXiv, discover patterns from papers, or review academic sources for pattern extraction.
arxiv-search
spring-ai-alibabaSearch the arXiv preprint repository for papers in physics, mathematics, computer science, quantitative biology, and related fields. Instructions for searching arXiv papers using a Python script and shell tool. Read SKILL.md to learn the workflow.
rings
parcadeiProblem-solving strategies for rings in abstract algebra
study-habits
openclawBuild effective study habits with spaced repetition, active recall, and session tracking
scientific-critical-thinking
Evaluate research rigor. Assess methodology, experimental design, statistical validity, biases, confounding, evidence quality (GRADE, Cochrane ROB), for critical analysis of scientific claims.
open-sets
parcadeiProblem-solving strategies for open sets in topology
canvas-lms
openclawAccess Canvas LMS (Instructure) for course data, assignments, grades, and submissions. Use when checking due dates, viewing grades, listing courses, or fetching course materials from Canvas.
Math-To-Manim
HarleyCoopsThis skill should be used when the user asks to "create a math animation", "animate a mathematical concept", "generate Manim code", "visualize [topic] with animation", "explain [concept] visually", "create an educational video", "build a Manim scene", or mentions "reverse knowledge tree", "prerequisite discovery", or "verbose prompt generation". Provides a complete six-agent workflow for transforming any concept into professional Manim animations through recursive prerequisite discovery.
convergence
parcadeiProblem-solving strategies for convergence in real analysis