rdkit

21.9k

davila7

Cheminformatics toolkit for fine-grained molecular control. SMILES/SDF parsing, descriptors (MW, LogP, TPSA), fingerprints, substructure search, 2D/3D generation, similarity, reactions. For standard workflows with simpler interface, use datamol (wrapper around RDKit). Use rdkit for advanced control, custom sanitization, specialized algorithms.

rdkit

11.3k

K-Dense-AI

Cheminformatics toolkit for fine-grained molecular control. SMILES/SDF parsing, descriptors (MW, LogP, TPSA), fingerprints, substructure search, 2D/3D generation, similarity, reactions. For standard workflows with simpler interface, use datamol (wrapper around RDKit). Use rdkit for advanced control, custom sanitization, specialized algorithms.

rdkit

1.1k

MooseGoose0701

Cheminformatics toolkit for fine-grained molecular control. SMILES/SDF parsing, descriptors (MW, LogP, TPSA), fingerprints, substructure search, 2D/3D generation, similarity, reactions. For standard workflows with simpler interface, use datamol (wrapper around RDKit). Use rdkit for advanced control, custom sanitization, specialized algorithms.

RDKit

1.1k

DP-Skills

Cheminformatics toolkit for fine-grained molecular control. SMILES/SDF parsing, descriptors (molecular weight (MW), LogP, TPSA), fingerprints, substructure search, 2D/3D generation, similarity, reactions. For standard workflows with a simpler interface, use datamol (a wrapper around RDKit). Use RDKit for advanced control, custom sanitization, and specialized algorithms.

rdkit

571

benchflow-ai

Cheminformatics toolkit for fine-grained molecular control. SMILES/SDF parsing, descriptors (MW, LogP, TPSA), fingerprints, substructure search, 2D/3D generation, similarity, reactions. For standard workflows with simpler interface, use datamol (wrapper around RDKit). Use rdkit for advanced control, custom sanitization, specialized algorithms.

ipsae

100

adaptyvbio

Binder design ranking using ipSAE (interprotein Score from Aligned Errors). Use this skill when: (1) Ranking binder designs for experimental testing, (2) Filtering BindCraft or RFdiffusion outputs, (3) Comparing AF2/AF3/Boltz predictions, (4) Predicting binding success rates, (5) Need better ranking than ipTM or iPAE. For structure prediction, use chai or alphafold. For QC thresholds, use protein-qc.

analysis-tshark

64

AgentSecOps

Network protocol analyzer and packet capture tool for traffic analysis, security investigations, and forensic examination using Wireshark's command-line interface. Use when: (1) Analyzing network traffic for security incidents and malware detection, (2) Capturing and filtering packets for forensic analysis, (3) Extracting credentials and sensitive data from network captures, (4) Investigating network anomalies and attack patterns, (5) Validating encryption and security controls, (6) Performing protocol analysis for vulnerability research.

api-mitmproxy

64

AgentSecOps

Interactive HTTPS proxy for API security testing with traffic interception, modification, and replay capabilities. Supports HTTP/1, HTTP/2, HTTP/3, WebSockets, and TLS-protected protocols. Includes Python scripting API for automation and multiple interfaces (console, web, CLI). Use when: (1) Intercepting and analyzing API traffic for security testing, (2) Modifying HTTP/HTTPS requests and responses to test API behavior, (3) Recording and replaying API traffic for testing, (4) Debugging mobile app or thick client API communications, (5) Automating API security tests with Python scripts, (6) Exporting traffic in HAR format for analysis.

dast-ffuf

64

AgentSecOps

Fast web fuzzer for DAST testing with directory enumeration, parameter fuzzing, and virtual host discovery. Written in Go for high-performance HTTP fuzzing with extensive filtering capabilities. Supports multiple fuzzing modes (clusterbomb, pitchfork, sniper) and recursive scanning. Use when: (1) Discovering hidden directories, files, and endpoints on web applications, (2) Fuzzing GET and POST parameters to identify injection vulnerabilities, (3) Enumerating virtual hosts and subdomains, (4) Testing authentication endpoints with credential fuzzing, (5) Finding backup files and sensitive data exposures, (6) Performing comprehensive web application reconnaissance.

policy-opa

64

AgentSecOps

Policy-as-code enforcement and compliance validation using Open Policy Agent (OPA). Use when: (1) Enforcing security and compliance policies across infrastructure and applications, (2) Validating Kubernetes admission control policies, (3) Implementing policy-as-code for compliance frameworks (SOC2, PCI-DSS, GDPR, HIPAA), (4) Testing and evaluating OPA Rego policies, (5) Integrating policy checks into CI/CD pipelines, (6) Auditing configuration drift against organizational security standards, (7) Implementing least-privilege access controls.

reviewdog

64

AgentSecOps

Automated code review and security linting integration for CI/CD pipelines using reviewdog. Aggregates findings from multiple security and quality tools (SAST, linters, formatters) into unified code review comments on pull requests. Use when: (1) Integrating security scanning into code review workflows, (2) Automating security feedback on pull requests, (3) Consolidating multiple tool outputs into actionable review comments, (4) Enforcing secure coding standards in CI/CD pipelines, (5) Providing inline security annotations during development.

container-grype

64

AgentSecOps

Container vulnerability scanning and dependency risk assessment using Grype with CVSS severity ratings, EPSS exploit probability, and CISA KEV indicators. Use when: (1) Scanning container images and filesystems for known vulnerabilities, (2) Integrating vulnerability scanning into CI/CD pipelines with severity thresholds, (3) Analyzing SBOMs (Syft, SPDX, CycloneDX) for security risks, (4) Prioritizing remediation based on threat metrics (CVSS, EPSS, KEV), (5) Generating vulnerability reports in multiple formats (JSON, SARIF, CycloneDX) for security toolchain integration.

forensics-osquery

64

AgentSecOps

SQL-powered forensic investigation and system interrogation using osquery to query operating systems as relational databases. Enables rapid evidence collection, threat hunting, and incident response across Linux, macOS, and Windows endpoints. Use when: (1) Investigating security incidents and collecting forensic artifacts, (2) Threat hunting across endpoints for suspicious activity, (3) Analyzing running processes, network connections, and persistence mechanisms, (4) Collecting system state during incident response, (5) Querying file hashes, user activity, and system configuration for compromise indicators, (6) Building detection queries for continuous monitoring with osqueryd.

sbom-syft

64

AgentSecOps

Software Bill of Materials (SBOM) generation using Syft for container images, filesystems, and archives. Detects packages across 28+ ecosystems with multi-format output support (CycloneDX, SPDX, syft-json). Enables vulnerability assessment, license compliance, and supply chain security. Use when: (1) Generating SBOMs for container images or applications, (2) Analyzing software dependencies and packages for vulnerability scanning, (3) Tracking license compliance across dependencies, (4) Integrating SBOM generation into CI/CD for supply chain security, (5) Creating signed SBOM attestations for software provenance.

sca-blackduck

64

AgentSecOps

Software Composition Analysis (SCA) using Synopsys Black Duck for identifying open source vulnerabilities, license compliance risks, and supply chain security threats with CVE, CWE, and OWASP framework mapping. Use when: (1) Scanning dependencies for known vulnerabilities and security risks, (2) Analyzing open source license compliance and legal risks, (3) Identifying outdated or unmaintained dependencies, (4) Integrating SCA into CI/CD pipelines for continuous dependency monitoring, (5) Providing remediation guidance for vulnerable dependencies with CVE and CWE mappings, (6) Assessing supply chain security risks and third-party component threats.

api-spectral

64

AgentSecOps

API specification linting and security validation using Stoplight's Spectral with support for OpenAPI, AsyncAPI, and Arazzo specifications. Validates API definitions against security best practices, OWASP API Security Top 10, and custom organizational standards. Use when: (1) Validating OpenAPI/AsyncAPI specifications for security issues and design flaws, (2) Enforcing API design standards and governance policies across API portfolios, (3) Creating custom security rules for API specifications in CI/CD pipelines, (4) Detecting authentication, authorization, and data exposure issues in API definitions, (5) Ensuring API specifications comply with organizational security standards and regulatory requirements.

container-hadolint

64

AgentSecOps

Dockerfile security linting and best practice validation using Hadolint with 100+ built-in rules aligned to CIS Docker Benchmark. Use when: (1) Analyzing Dockerfiles for security misconfigurations and anti-patterns, (2) Enforcing container image security best practices in CI/CD pipelines, (3) Detecting hardcoded secrets and credentials in container builds, (4) Validating compliance with CIS Docker Benchmark requirements, (5) Integrating shift-left container security into developer workflows, (6) Providing remediation guidance for insecure Dockerfile instructions.

recon-nmap

64

AgentSecOps

Network reconnaissance and security auditing using Nmap for port scanning, service enumeration, and vulnerability detection. Use when: (1) Conducting authorized network reconnaissance and asset discovery, (2) Enumerating network services and identifying running versions, (3) Detecting security vulnerabilities through NSE scripts, (4) Mapping network topology and firewall rules, (5) Performing compliance scanning for security assessments, (6) Validating network segmentation and access controls.

crack-hashcat

64

AgentSecOps

Advanced password recovery and hash cracking tool supporting multiple algorithms and attack modes. Use when: (1) Performing authorized password auditing and security assessments, (2) Recovering passwords from captured hashes in forensic investigations, (3) Testing password policy strength and complexity, (4) Validating encryption implementations, (5) Conducting security research on cryptographic hash functions, (6) Demonstrating password weakness in penetration testing reports.

sast-horusec

64

AgentSecOps

Multi-language static application security testing using Horusec with support for 18+ programming languages and 20+ security analysis tools. Performs SAST scans, secret detection in git history, and provides vulnerability findings with severity classification. Use when: (1) Analyzing code for security vulnerabilities across multiple languages simultaneously, (2) Detecting exposed secrets and credentials in git history, (3) Integrating SAST into CI/CD pipelines for secure SDLC, (4) Performing comprehensive security analysis during development, (5) Managing false positives and prioritizing security findings.

dast-nuclei

64

AgentSecOps

Fast, template-based vulnerability scanning using ProjectDiscovery's Nuclei with extensive community templates covering CVEs, OWASP Top 10, misconfigurations, and security issues across web applications, APIs, and infrastructure. Use when: (1) Performing rapid vulnerability scanning with automated CVE detection, (2) Testing for known vulnerabilities and security misconfigurations in web apps and APIs, (3) Running template-based security checks in CI/CD pipelines with customizable severity thresholds, (4) Creating custom security templates for organization-specific vulnerability patterns, (5) Scanning multiple targets efficiently with concurrent execution and rate limiting controls.

ir-velociraptor

64

AgentSecOps

Endpoint visibility, digital forensics, and incident response using Velociraptor Query Language (VQL) for evidence collection and threat hunting at scale. Use when: (1) Conducting forensic investigations across multiple endpoints, (2) Hunting for indicators of compromise or suspicious activities, (3) Collecting endpoint telemetry and artifacts for incident analysis, (4) Performing live response and evidence preservation, (5) Monitoring endpoints for security events, (6) Creating custom forensic artifacts for specific threat scenarios.

pentest-metasploit

64

AgentSecOps

Penetration testing framework for exploit development, vulnerability validation, and authorized security assessments using Metasploit Framework. Use when: (1) Validating vulnerabilities in authorized security assessments, (2) Demonstrating exploit impact for security research, (3) Testing defensive controls in controlled environments, (4) Conducting authorized penetration tests with proper scoping and authorization, (5) Developing post-exploitation workflows for red team operations.

dast-zap

64

AgentSecOps

Dynamic application security testing (DAST) using OWASP ZAP (Zed Attack Proxy) with passive and active scanning, API testing, and OWASP Top 10 vulnerability detection. Use when: (1) Performing runtime security testing of web applications and APIs, (2) Detecting vulnerabilities like XSS, SQL injection, and authentication flaws in deployed applications, (3) Automating security scans in CI/CD pipelines with Docker containers, (4) Conducting authenticated testing with session management, (5) Generating security reports with OWASP and CWE mappings for compliance.

detection-sigma

64

AgentSecOps

Generic detection rule creation and management using Sigma, the universal SIEM rule format. Sigma provides vendor-agnostic detection logic for log analysis across multiple SIEM platforms. Use when: (1) Creating detection rules for security monitoring, (2) Converting rules between SIEM platforms (Splunk, Elastic, QRadar, Sentinel), (3) Threat hunting with standardized detection patterns, (4) Building detection-as-code pipelines, (5) Mapping detections to MITRE ATT&CK tactics, (6) Implementing compliance-based monitoring rules.

iac-checkov

64

AgentSecOps

Infrastructure as Code (IaC) security scanning using Checkov with 750+ built-in policies for Terraform, CloudFormation, Kubernetes, Dockerfile, and ARM templates. Use when: (1) Scanning IaC files for security misconfigurations and compliance violations, (2) Validating cloud infrastructure against CIS, PCI-DSS, HIPAA, and SOC2 benchmarks, (3) Detecting secrets and hardcoded credentials in IaC, (4) Implementing policy-as-code in CI/CD pipelines, (5) Generating compliance reports with remediation guidance for cloud security posture management.

network-netcat

64

AgentSecOps

Network utility for reading and writing data across TCP/UDP connections, port scanning, file transfers, and backdoor communication channels. Use when: (1) Testing network connectivity and port availability, (2) Creating reverse shells and bind shells for authorized penetration testing, (3) Transferring files between systems in restricted environments, (4) Banner grabbing and service enumeration, (5) Establishing covert communication channels, (6) Testing firewall rules and network segmentation.

webapp-nikto

64

AgentSecOps

Web server vulnerability scanner for identifying security issues, misconfigurations, and outdated software versions. Use when: (1) Conducting authorized web server security assessments, (2) Identifying common web vulnerabilities and misconfigurations, (3) Detecting outdated server software and known vulnerabilities, (4) Performing compliance scans for web server hardening, (5) Enumerating web server information and enabled features, (6) Validating security controls and patch levels.

webapp-sqlmap

64

AgentSecOps

Automated SQL injection detection and exploitation tool for web application security testing. Use when: (1) Testing web applications for SQL injection vulnerabilities in authorized assessments, (2) Exploiting SQL injection flaws to demonstrate impact, (3) Extracting database information for security validation, (4) Bypassing authentication mechanisms through SQL injection, (5) Identifying vulnerable parameters in web requests, (6) Automating database enumeration and data extraction.

pet-memorial-creator

43

curiositech

Compassionate support for pet loss, memorial creation, and honoring the bond between humans and their animal companions. Specializes in tribute writing, keepsake ideas, and navigating the unique grief of losing a pet.

topsail-ci

16

openshift-psap

Suite of tools to fetch TOPSAIL CI logs and artifacts for test troubleshooting

rdkit

15

Oimiragieo Agent Studio Rdkit

Cheminformatics toolkit for fine-grained molecular control. SMILES/SDF parsing, descriptors (MW, LogP, TPSA), fingerprints, substructure search, 2D/3D generation, similarity, reactions. For standard workflows with simpler interface, use datamol (wrapper around RDKit). Use rdkit for advanced control, custom sanitization, specialized algorithms.

RDKit

12

x-cmd

Cheminformatics toolkit for fine-grained molecular control. SMILES/SDF parsing, descriptors (MW, LogP, TPSA), fingerprints, substructure search, 2D/3D generation, similarity, reactions. For standard workflows with simpler interface, use datamol (wrapper around RDKit). Use rdkit for advanced control, custom sanitization, specialized algorithms.

iac-diagram-generator

7

johnpsasser

Analyzes Infrastructure as Code files (Terraform, CloudFormation, Kubernetes, Docker Compose) and generates visual architecture diagrams. Use when analyzing infrastructure code, designing cloud architectures, or when the user requests architecture diagrams from IaC.

academic

4

carlheath

Akademiskt skrivande med vetenskaplig stringens — svenska eller engelska. [VAD] Uppsatser, rapporter, avhandlingar, litteraturöversikter, papers enligt högskolestandarder. IMRAD-struktur, Harvard/APA-referenshantering. Tvåspråkig skill. [NÄR] Use when: akademisk, vetenskaplig, uppsats, rapport, avhandling, litteraturöversikt, forskningstext, Harvard-referens, APA-referens, kandidat, master, doktorand, paper, thesis [SPRÅK] Svenska eller engelska — matcha input eller fråga [EXPERTISE] Academic writing, methodology, source criticism, qualitative/quantitative (SV/EN)

implementing-pod-security-admission-controller

2

mukul975

Implement Kubernetes Pod Security Admission to enforce baseline and restricted security profiles at namespace level using built-in admission controller.

grade-tcg-card

2

pjt222

Grade a trading card using PSA, BGS, or CGC standards. Covers observation-first assessment (adapted from meditate's unbiased observation), centering measurement, surface analysis, edge and corner evaluation, and final grade assignment with confidence interval. Supports Pokemon, MTG, Flesh and Blood, and Kayou cards. Use when evaluating a card before professional grading submission, pre-screening a collection for high-grade candidates, settling condition disputes between buyers and sellers, or estimating the grade-dependent value spread for a card.

grade-tcg-card

2

pjt222

Grade a trading card using PSA, BGS, or CGC standards. Covers observation-first assessment (adapted from meditate's unbiased observation), centering measurement, surface analysis, edge and corner evaluation, and final grade assignment with confidence interval. Supports Pokemon, MTG, Flesh and Blood, and Kayou cards. Use when evaluating a card before professional grading submission, pre-screening a collection for high-grade candidates, settling condition disputes between buyers and sellers, or estimating the grade-dependent value spread for a card.

None

2

mukul975

Pod Security Standards (PSS) define three levels of security policies -- Privileged, Baseline, and Restricted -- enforced by the Pod Security Admission (PSA) controller built into Kubernetes 1.25+. PS

RDKit

1

iamseungpil

Cheminformatics toolkit for fine-grained molecular control. SMILES/SDF parsing, descriptors (MW, LogP, TPSA), fingerprints, substructure search, 2D/3D generation, similarity, reactions. For standard workflows with simpler interface, use datamol (wrapper around RDKit). Use rdkit for advanced control, custom sanitization, specialized algorithms.

rdkit

reikiplanet

Cheminformatics toolkit for fine-grained molecular control. SMILES/SDF parsing, descriptors (MW, LogP, TPSA), fingerprints, substructure search, 2D/3D generation, similarity, reactions. For standard workflows with simpler interface, use datamol (wrapper around RDKit). Use rdkit for advanced control, custom sanitization, specialized algorithms.